PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G256500.1
Common NameB456_002G256500, LOC105787367
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 147aa    MW: 16100.8 Da    PI: 5.6352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G256500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-053052123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C+k Fs+   L  H++ H
  Gorai.002G256500.1 30 YTCSFCKKGFSNAQALGGHMNIH 52
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-72656No hitNo description
Gene3DG3DSA:3.30.160.607.1E-62854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5723057IPR007087Zinc finger, C2H2
SMARTSM003550.00423052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
METKHPKLEK PDQIVWSLEE EDVSIHSKSY TCSFCKKGFS NAQALGGHMN IHRKDRAKLR  60
ESFEENVLIS SDITLGLVQV QDRYLISETI LESSGEKKVP RDDDNGSGAS PKGKDGVGEN  120
SRSSHGSSSQ VELDLELRLG PDSRAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469175.11e-104PREDICTED: transcriptional regulator TAC1-like
SwissprotQ9SR347e-18TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLA0A0D2QJ631e-103A0A0D2QJ63_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-17C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]